Supported Species List
| Species | Reference Version | lncRNA | miRNA | mRNA | WGBS | Single Cell RNA-seq | Protein |
|---|---|---|---|---|---|---|---|
| Homo_sapiens | GCF_000001405.25_GRCh37.p13 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| GCF_000001405.39_GRCh38.p13 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| GCF_000001405.40_GRCh38.p14 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| Ensembl release-103 | Supported | Supported | Supported | Unsupported | Supported | Supported | |
| Ensembl release-104 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Ensembl release-105 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| 10Xgenomic refdata-gex-GRCh38-2020-A | Supported | Supported | Supported | Unsupported | Supported | Supported | |
| 10Xgenomic refdata-cellranger-GRCh38-3.0.0 | Supported | Supported | Supported | Unsupported | Supported | Supported | |
| 10Xgenomic refdata-cellranger-hg19-3.0.0 | Supported | Supported | Supported | Unsupported | Supported | Supported | |
| BD GRCh39-PhiX-gencodev29 | Supported | Supported | Supported | Unsupported | Supported | Supported | |
| UCSC hg38 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| Mus_musculus | GCF_000001635.26_GRCm38.p6 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| GCF_000001635.27_GRCm39 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| Ensembl release-103 | Supported | Supported | Supported | Unsupported | Supported | Supported | |
| Ensembl release-104 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Ensembl release-105 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| UCSC mm39 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| UCSC mm10 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| 10Xgenomic refdata-gex-mm10-2020-A | Unsupported | Unsupported | Unsupported | Unsupported | Supported | Unsupported | |
| 10Xgenomic refdata-cellranger-mm10-3.0.0 | Unsupported | Unsupported | Unsupported | Unsupported | Supported | Unsupported | |
| Rattus_norvegicus | GCF_000001895.5_Rnor_6.0 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| GCF_015227675.2_mRatBN7.2 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| Ensembl release-104 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Ensembl release-105 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Ensembl release-102 | Unsupported | Unsupported | Unsupported | Unsupported | Supported | Unsupported | |
| Nicotiana_tabacum | GCF_000715135.1_Ntab-TN90 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Edwards2017 (chromosome) | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Unsupported | |
| Edwards2017 (scaffold) | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Arabidopsis_thaliana | GCF_000001735.4_TAIR10.1 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| TAIR10 | Unsupported | Supported | Supported | Supported | Unsupported | Supported | |
| Araport11 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Danio_rerio | GCF_000002035.6_GRCz11 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| Ensembl release-104 | Supported | Supported | Supported | Unsupported | Supported (Cell Annotation and Cell Communication are not supported） | Supported | |
| Ensembl release-105 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Drosophila_melanogaster | GCF_000001215.4_Release_6_plus_ISO1_MT | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Oryza_sativa_Japonica_Group | GCF_001433935.1_IRGSP-1.0 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| rapdb-Os-Nipponbare-Reference-IRGSP-1.0 | Unsupported | Supported | Supported | Supported | Unsupported | Supported | |
| rice.uga.edu_version_7.0 | Unsupported | Supported | Supported | Supported | Unsupported | Supported | |
| RiceRC_ IGDBv1.9311 | Unsupported | Unsupported | Supported | Supported | Unsupported | Supported | |
| Brassica_napus | GCF_000686985.2_Bra_napus_v2.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| BnPIR_zs11.v0 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| BnPIR_Darmor.v4.1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Bos_taurus | GCF_000003205.7_Btau_5.0.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_002263795.1_ARS-UCD1.2 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Sus_scrofa | GCF_000003025.6_Sscrofa11.1 | Supported | Supported | Supported | Unsupported | Supported (Cell Annotation and Cell Communication are not supported） | Supported |
| Zea_mays | GCF_000005005.2_B73_RefGen_v4 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Zm-B73-REFERENCE-GRAMENE-4.0 | Unsupported | Unsupported | Supported | Unsupported | Supported (Cell Annotation and Cell Communication are not supported） | Supported | |
| Caenorhabditis_elegans | GCF_000002985.6_WBcel235 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Tetrahymena_thermophila_SB210_312017 | GCF_000189635.1_JCVI-TTA1-2.2 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Solanum_lycopersicum_4081 | GCF_000188115.4_SL3.0 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| JGI-ITAG2.4 | Unsupported | Supported | Supported | Supported | Unsupported | Supported | |
| solgenomics.net-ITAG4.0 | Supported | Supported | Supported | Supported | Unsupported | Supported | |
| GCF_000188115.5_SL3.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Gallus_gallus_9031 | GCF_000002315.5_GRCg6a | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| release-107 | Unsupported | Unsupported | Supported | Unsupported | Supported (Cell Annotation and Cell Communication are not supported） | Supported | |
| Populus_trichocarpa_3694 | GCF_000002775.4_Pop_tri_v3 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| JGI_v4.1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Gossypium_hirsutum_3635 | GCF_000987745.1_ASM98774v1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_007990345.1_Gossypium_hirsutum_v2.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| cottongen_CRI_v1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Saccharomyces_cerevisiae_S288C_559292 | GCF_000146045.2_R64 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Glycine_max_3847 | GCF_000004515.5_Glycine_max_v2.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| JGI-Wm82.a4.v1 | Unsupported | Supported | Supported | Unsupported | Unsupported | Supported | |
| GCF_000004515.6_Glycine_max_v4.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| GCF_004193775.1_ASM419377v2 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Aedes_aegypti_7159 | GCF_002204515.2_AaegL5.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Malus_domestica_3750 | GCF_002114115.1_ASM211411v1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Citrus_sinensis_2711 | GCF_000317415.1_Csi_valencia_1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Metarhizium_acridum_CQMa_102_655827 | GCF_000187405.1_MetAcr_May2010 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Prunus_persica_3760 | GCF_000346465.2_Prunus_persica_NCBIv2 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Aedes_albopictus_7160 | GCF_001876365.2_canu_80X_arrow2.2 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| GCF_006496715.1_Aalbo_primary.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Medicago_truncatula_3880 | GCF_000219495.3_MedtrA17_4.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_003473485.1_MtrunA17r5.0-ANR | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Escherichia_coli_str._K-12_substr._MG1655_511145 | GCF_000005845.2_ASM584v2 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Aspergillus_niger_5061 | GCF_000002855.3_ASM285v2 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Ovis_aries_9940 | GCF_002742125.1_Oar_rambouillet_v1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_000298735.2_Oar_v4.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| GCF_016772045.1_ARS-UI_Ramb_v2.0 | Supported | Supported | Supported | Unsupported | Supported (Cell Annotation and Cell Communication are not supported） | Supported | |
| Capra_hircus_9925 | GCF_001704415.1_ARS1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Macaca_fascicularis_9541 | GCF_000364345.1_Macaca_fascicularis_5.0 | Supported | Unsupported | Supported | Supported | Unsupported | Supported |
| Apis_mellifera_7460 | GCF_003254395.2_Amel_HAv3.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Apis_cerana | GCF_001442555.1_ACSNU-2.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Odocoileus_virginianus_texanus_9880 | GCF_002102435.1_Ovir.te_1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Arachis_hypogaea_3818 | GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3 | Supported | Supported | Supported | Supported | Unsupported | Supported |
| Oryctolagus_cuniculus_9986 | GCF_000003625.3_OryCun2.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Ziziphus_jujuba_326968 | GCF_000826755.1_ZizJuj_1.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Bactrocera_dorsalis_27457 | GCF_000789215.1_ASM78921v2 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Manihot_esculenta_3983 | GCF_001659605.1_Manihot_esculenta_v6 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_001659605.2_M.esculenta_v8 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Arachis_duranensis_130453 | GCF_000817695.2_Aradu1.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Ananas_comosus_4615 | GCF_001540865.1_ASM154086v1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Helicoverpa_armigera_29058 | GCF_002156985.1_Harm_1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Gossypium_raimondii_29730 | GCF_000327365.1_Graimondii2_0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Aphis_gossypii_80765 | GCF_004010815.1_ASM401081v1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Plutella_xylostella_51655 | GCF_000330985.1_DBM_FJ_V1.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_905116875.1_Haplomerged_assembly | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Fusarium_graminearum_PH-1_229533 | GCF_000240135.3_ASM24013v3 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Chlorocebus_sabaeus_60711 | GCF_000409795.2_Chlorocebus_sabeus_1.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| GCF_015252025.1_Vero_WHO_p1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Vitis_vinifera_29760 | GCF_000003745.3_12X | Supported | Supported | Supported | Supported | Unsupported | Supported |
| ensembl_release-55 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Bombyx_mori_7091 | GCF_000151625.1_ASM15162v1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_014905235.1_Bmori_2016v1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Solanum_tuberosum_4113 | GCF_000226075.1_SolTub_3.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| spuddb_DMv6.1 | Unsupported | Supported | Supported | Unsupported | Unsupported | Supported | |
| JGI_v6.1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Triticum aestivum L.（Chinese Spring） | IWGSC RefSeq assembly v1.0 | Unsupported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_018294505.1_IWGSC_CS_RefSeq_v2.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| LncPheDB_v2023-11-24 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| barley (Hordeum vulgare) | Barley_Morex_V2 | Unsupported | Supported | Supported | Unsupported | Unsupported | Supported |
| Large yellow croaker (Larimichthys crocea) | GCA_003845795.1 LCFGL_HiC_1.0 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| GCF_000972845.2_L_crocea_2.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Brassica_rapa | GCF_000309985.1_Brapa_1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_000309985.2_CAAS_Brap_v3.01 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| C_albicans_SC5314 | candidagenome_Assembly22 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Anas_platyrhynchos | GCF_000355885.1_BGI_duck_1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_015476345.1_ZJU1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Komagataella_phaffii_GS115 | GCF_000027005.1_ASM2700v1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Pantholops_hodgsonii | GCF_000400835.1_PHO1.0 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Tribolium_castaneum | GCF_000002335.3_Tcas5.2 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Xenopus_laevis | GCF_017654675.1_Xenopus_laevis_v10.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Canis_familiaris | GCF_000002285.3_CanFam3.1 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_000002285.5_Dog10K_Boxer_Tasha | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Daucus_carota_subsp_sativus | GCF_001625215.1_ASM162521v1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Cucumis_sativus | GCF_000004075.2_ASM407v2 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| GCF_000004075.3_Cucumber_9930_V3 | Supported | Supported | Supported | Unsupported | Unsupported | Supported | |
| Capsicum_annuum | GCF_000710875.1_Pepper_Zunla_1_Ref_v1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Trichoderma_reesei_QM6a | GCF_000167675.1_v2.0 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Fragaria_vesca_subsp_vesca | GCF_000184155.1_FraVesHawaii_1.0 | Supported | Supported | Supported | Unsupported | Unsupported | Supported |
| Pyrus_bretschneideri | GCF_000315295.1_Pbr_v1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Sesamum_indicum | GCF_000512975.1_S_indicum_v1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Chlorella_variabilis_NC64A | GCF_000147415.1_v_1.0 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Camelus_bactrianus | GCF_000767855.1_Ca_bactrianus_MBC_1.0 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Mesocricetus_auratus | GCF_017639785.1_BCM_Maur_2.0 | Supported | Unsupported | Supported | Unsupported | Supported (Cell Annotation and Cell Communication are not supported） | Supported |
| Populus_deltoides | JGI_WV94.v2.1 | Unsupported | Unsupported | Supported | Supported | Unsupported | Supported |
| Populus_alba_x_Populus_glandulosa | CNCB_v2019-10-12 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Camellia_sinensis | CSS_ChrLev_20200506 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Coptis_chinensis | GCA_015680905.1_ASM1568090v1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Alternaria_alternata | JGI_v2019-11-14 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Carassius_auratus | CNCB_v2022-05-26 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Carassius_gibelio | CNCB_v2022-05-26 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Chrysanthemum_x_morifolium | figshare_v2023-03-14 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Citrus_clementina | JGI_Citrus_clementina_v1.0 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Coccinella_septempunctata | InsectBase_GCA_907165205.1 | Unsupported | Supported | Supported | Unsupported | Unsupported | Supported |
| Lactuca_sativa | GCF_002870075.4_Lsat_Salinas_v11 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Lobularia_maritima | CNCB_v2020-12-21 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Miscanthus_sinensis | JGI_v7.1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Medicago_sativa | figshare_v2020-07-09 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Mustela_putorius_furo | GCF_011764305.1_ASM1176430v1.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Oncorhynchus_kisutch | GCF_002021735.2_Okis_V2 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Toxoplasma_gondii_GT1 | GCA_000149715.2_TGGT1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| toxodb_v2023-04-18 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported | |
| Aspergillus_flavus | Ensembl-release-57 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Aspergillus_nidulans | jgi-v2011-02-04 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Camponotus_floridanus | GCF_003227725.1_Cflo_v7.5 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Cocos_nucifera | GCA_008124465.1_ASM812446v1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Fagus_sylvatica | ThinesLab_version_2 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Frankliniella_occidentalis | GCF_000697945.3_Focc_3.1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Neophocaena_asiaeorientalis_asiaeorientalis | GCF_003031525.2_Neophocaena_asiaeorientalis_V1.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Olea_europaea_var_sylvestris | olivegenome_v2023-11-01 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Paeonia_ostii | CNCB_v2022-05-31 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Rhododendron_simsii | GCA_014282245.1_ASM1428224v1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Sinocyclocheilus_grahami | GCF_001515645.1_SAMN03320097.WGS_v1.1 | Supported | Unsupported | Supported | Unsupported | Unsupported | Supported |
| Solanum_melongena | solgenomics_V4.1 | Unsupported | Unsupported | Supported | Unsupported | Unsupported | Supported |