Scibet 可选数据集
约 64 字小于 1 分钟
Scibet 可选数据集
| Title | Cell types |
|---|---|
| 30 major human cell types | Astrocytes; B cell; DC; Endothelial; Epithelial; FGC; GABAergic neurons; H9 cells; HEK and 3T3 mix; HSCs; ILC; Macrophage; Mast; Microglia; Monocyte; Muscle; NK; Pancreatic islets; Plasma B; Skeletal Muscle Myoblasts; Soma; T cell; embryonic stem cells; epithelial cells; foreskin fibroblast cells; hepatocytes; interneurons; neural progenitor cell; oligodendrocyte progenitor cell; preimplantation blastomere; |
| Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris | lung endothelial cell; late pro-B cell; naive B cell; bladder cell; kidney collecting duct epithelial cell; monocyte; skeletal muscle satellite stem cell; pre-natural killer cell; mature natural killer cell; epidermal cell; large intestine goblet cell; epithelial cell of lung; type B pancreatic cell; epithelial cell of proximal tubule; DN1 thymic pro-T cell; stem cell of epidermis; Brush cell of epithelium proper of large intestine; immature NK T cell; leukocyte; myeloid cell; granulocytopoietic cell; endothelial cell of hepatic sinusoid; myofibroblast cell; Kupffer cell; keratinocyte; microglial cell; enterocyte of epithelium of large intestine; fibroblast; Slamf1-positive multipotent progenitor cell; immature B cell; brain pericyte; granulocyte; mesenchymal cell; pancreatic acinar cell; ciliated columnar cell of tracheobronchial tree; astrocyte; immature T cell; Slamf1-negative multipotent progenitor cell; pancreatic ductal cell; immature natural killer cell; megakaryocyte-erythroid progenitor cell; macrophage; basal cell; professional antigen presenting cell; oligodendrocyte; endocardial cell; erythrocyte; skeletal muscle satellite cell; hematopoietic precursor cell; cardiac muscle cell; lymphocyte; smooth muscle cell; precursor B cell; mesenchymal stem cell; blood cell; Bergmann glial cell; epithelial cell; neuron; enteroendocrine cell; hepatocyte; pancreatic D cell; common lymphoid progenitor; basal cell of epidermis; luminal epithelial cell of mammary gland; stromal cell; pancreatic PP cell; endothelial cell; T cell; natural killer cell; classical monocyte; basophil; B cell; pancreatic A cell; bladder urothelial cell; mesenchymal stem cell of adipose; pancreatic stellate cell; keratinocyte stem cell; granulocyte monocyte progenitor cell; epithelial cell of large intestine; oligodendrocyte precursor cell |
| Early emergence of cortical interneuron diversity in the mouse embryo | ventral medial ganglionic eminence; dorsal medial ganglionic eminence; caudal ganglionic eminence |
| Machine learning based classification of cells into chronological stages using single-cell transcriptomics | beta |
| Single-cell RNA sequencing reveals metallothionein heterogeneity during hESC differentiation to definitive endoderm | embryonic stem cell |
| Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data | plasma cell |
| Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells | CD4-positive helper T cell |
| Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons | Inhibitory Neurons; Astrocytes; Neuroepithelial; Radial Glia; Neurons |
| Profiling human breast epithelial cells using single cell RNA sequencing identifies cell diversity | myoepithelial cell of mammary gland; luminal epithelial cell of mammary gland |
| Toward Minimal Residual Disease-Directed Therapy in Melanoma | BRAF V600E/K mutant |
| Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics | EC; LH(AL#1); IC-B; PC; LH(AL#2); Podocyte; LH(DL); DCT; Mesangium; PT(S2); PT(S1); PT(S3); Macrophage; IC-A; CNT |
| Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina | M4Fovea3; M1Fovea2; M1Fovea7; M2Fovea7; M2Fovea2; M2Fovea3; M1Fovea1; M2Fovea1; M4Fovea2; M2Fovea8; M4Fovea1; M2Fovea6; M3Fovea1; M1Fovea3; M1Fovea8; M3Fovea3; M1Fovea6; M1Fovea5; M2Fovea4; M3Fovea2; M1Fovea4; M2Fovea5 |
| The adult human testis transcriptional cell atlas | """early primary Scytes""; SSC; endothelial cell; sertoli cell; myoid cell; ""late primary Scytes""; ""round Stids""; ""elongated Stids""; ""differentiating Sgonia""; leydig cell; sperm; macrophage" |
| The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing | group 2 innate lymphoid cell; group 1 innate lymphoid cell; group 3 innate lymphoid cell; natural killer cell |
| Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq | Endothelial; T; CAF; undefined; Macrophage; B; NK |
| Single-cell RNA-seq enables comprehensive tumor and immune cell profiling in primary breast cancer | BC07LN; BC02; BC07; BC06; BC08; BC10; BC09_Re; BC05; BC01; BC09; BC03; BC04; BC03LN; BC11 |
| Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq | BRAF and NRAS wild type; BRAF wild type and NRAS G13R mutant; BRAF V600E mutant and NRAS wild type |
| Single-Cell Analysis of Human Pancreas Reveals Transcriptional Signatures of Aging and Somatic Mutation Patterns | pancreatic D cell; mesenchymal cell; not available; pancreatic A cell; acinar cell; pancreatic ductal cell; type B pancreatic cell |
| RNA Sequencing of Single Human Islet Cells Reveals Type 2 Diabetes Genes | Non T2D 4; Non T2D 11; Non T2D 5; Non T2D 1; Non T2D 6; T2D 2; T2D 4; Non T2D 7; T2D 3; T2D 1; T2D 5; Non T2D 8; T2D 6; Non T2D 10; Non T2D 2; Non T2D 9; Non T2D 3; Non T2D 12 |
| A single-cell resolution map of mouse hematopoietic stem and progenitor cell differentiation | long term hematopoietic stem cell; megakaryocyte-erythroid progenitor cell; common myeloid progenitor and granulocyte monocyte progenitor cell; hematopoietic stem cell and hematopoietic multipotent progenitor cell |
| Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics | muller; cones; bipolar; amacrine; rods |
| A Single-Cell Transcriptomic Map of the Human and Mouse Pancreas Reveals Inter- and Intra-cell Population Structure | mast; quiescent_stellate; activated_stellate; gamma; delta; ductal; beta; endothelial; t_cell; epsilon; acinar; alpha; macrophage; schwann |
| Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma | oligodendrocyte; immune cell; astrocyte; vascular cell; neoplastic cell; neuron; oligodendrocyte precursor cell |
| A Single-Cell Transcriptome Atlas of the Human Pancreas | mesenchymal; gamma; delta; ductal; endothelial; beta; epsilon; acinar; alpha |
| Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis | epithelial cell |
| Deciphering Pancreatic Islet β Cell and α Cell Maturation Pathways and Characteristic Features at the Single-Cell Level | beta; alpha |
| Single-Cell RNA-Seq Reveals Hypothalamic Cell Diversity | POPC; Micro; Glu11; GABA12; GABA4; Glu15; GABA7; Ependy; GABA18; GABA8; Glu5; GABA11; Glu4; GABA14; GABA13; Glu6; Macro; GABA6; Glu14; GABA1; Astro; Glu13; OPC; GABA16; SCO; Glu8; Glu10; Tany; Glu9; Glu7; Epith1; GABA5; GABA9; Epith2; GABA17; GABA3; GABA15; Glu2; Glu12; Glu3; GABA10; IMO; Hista; Glu1; MO; GABA2 |
| Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment | hematopoietic stem cell |
| Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs | pre-conventional dendritic cell; conventional dendritic cell |
| A molecular census of arcuate hypothalamus and median eminence cell types | Neurons5; Tanycyte2; NG2/OPC; Oligodend1; Neurons4; Endothelial_Cells; ParsTuber1; Neurons3; Astrocyte; Mural_Cells; Oligodend2; Neurons1; Ependymocytes; VLMC; Tanycyte1; Neurons6; PVMMicro; Oligodend3; Neurons2; ParsTuber2 |
| Epithelial-Mesenchymal Micro-niches Govern Stem Cell Lineage Choices | K14-H2BGFP;LEF1-RFP; Lgr5-eGFP-IRES-CreER;Rosa26-tdTomato; Lhx2-GFP |
| A single-cell survey of the small intestinal epithelium (10x genomics) | epithelial cell |
| A single-cell survey of the small intestinal epithelium (smart-seq2) | epithelial cell |
| Single-cell profiling of an in vitro model of human interneuron development reveals temporal dynamics of cell type production and maturation | embryonic stem cell |
| "Single-cell RNA-seq reveals new types of human blood dendritic cells | 10.1126/science.aah4573 |
| A molecular atlas of cell types and zonation in the brain vasculature (principal vascular (endothelial and mural cells)) | Pdgfra-H2BGFP; Cldn5-GFP; Pdgfrb-GFP;NG2dsRed |
| A molecular atlas of cell types and zonation in the brain vasculature (vascular-associated cell) | SM22-Cre;R26-stop-tdTomato |
| A molecular atlas of cell types and zonation in the brain vasculature (astrocyte of mouse brain) | Pdgfrb-GFP;NG2dsRed; Cldn5-GFP; Pdgfrb-GFP |
| Single-cell RNA-seq reveals a subpopulation of prostate cancer cells with enhanced cell cycle-related transcription and attenuated androgen response | epithelial cell |
| Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli Are Altered with Age. | long term hematopoietic stem cell; hematopoietic multipotent progenitor cell; short term hematopoietic stem cell |
| Single-cell analysis reveals the continuum of human lympho-myeloid progenitor cells | multi-lymphoid progenitor; granulocyte macrophage progenitor; lymphoid-primed multipotent progenitor |
| A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte | Basal; Brush; Ionocytes; Ciliated; Secretory; Cycling Basal (homeostasis); PNEC; Krt4/13+ |
| Whole-organism clone tracing using single-cell sequencing | fibroblast; immune; epidermis; osteoblast |
| Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution | microglial cell |
| A revised airway epithelial hierarchy includes CFTR-expressing ionocytes | Basal; Tuft; Ionocyte; Club; Goblet; Ciliated; Neuroendocrine |
| Spatial and Single-Cell Transcriptional Profiling Identifies Functionally Distinct Human Dermal Fibroblast Subpopulations | fibroblast of dermis |
| T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation | Neutrophil; Epithelial; DC; Plasma cell; pDC; B cell; Inflammatory Monocytes; Monocyte (cycling); CD4; NK; CD8; Macrophage (M2) |
| Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis | peripheral blood mononuclear cell |
| Pulmonary alveolar type I cell population consists of two distinct subtypes that differ in cell fate | alveolar type 2; alveolar type 1 |
| A single-cell hematopoietic landscape resolves 8 lineage trajectories and defects in Kit mutant mice | granulocyte monocyte progenitor cell; basophil mast progenitor cell |
| Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease | Neutro; CD-PC; CD-IC; Novel1; PT; T lymph; CD-Trans; DCT; Macro; Podo; Endo; Novel2; NK; B lymph; LOH; Fib |
| Dissecting the Global Dynamic Molecular Profiles of Human Fetal Kidney Development by Single-Cell RNA Sequencing | LH; PD; CD; PT; EM; CM; RI; ED; MG; ER; IMM; DT |
| A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade [cancer cells] | Mel106; Mel129pa; Mel103; Mel194; Mel88; Mel81; Mel102; Mel110; Mel71; Mel80; Mel78; Mel98; Mel89; Mel79 |
| A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade [non-cancer cells] | T.CD8; CAF; T.cell; B.cell; Macrophage; T.CD4; NK; Endothelial.cell |
| Tabula Muris - [Bladder_10x] | leukocyte; bladder cell; endothelial cell; bladder urothelial cell |
| Tabula Muris - [Bladder_Smart-seq2] | bladder cell; bladder urothelial cell |
| Tabula Muris - [Bone_Marrow_10x] | granulocytopoietic cell; erythroblast; late pro-B cell; promonocyte; immature B cell; T cell; monocyte; granulocyte; hematopoietic precursor cell; basophil; early pro-B cell; Fraction A pre-pro B cell; macrophage; proerythroblast |
| Tabula Muris - [Bone_Marrow_Smart-seq2] | late pro-B cell; naive B cell; monocyte; pre-natural killer cell; mature natural killer cell; immature NK T cell; Slamf1-positive multipotent progenitor cell; immature B cell; granulocyte; immature T cell; immature natural killer cell; Slamf1-negative multipotent progenitor cell; macrophage; hematopoietic precursor cell; common lymphoid progenitor; pro-B cell; basophil; regulatory T cell; B cell; megakaryocyte-erythroid progenitor cell; granulocyte monocyte progenitor cell |
| Tabula Muris - [Brain_Myeloid_Smart-seq2] | macrophage; microglial cell |
| Tabula Muris - [Brain_Non-Myeloid_Smart-seq2] | oligodendrocyte; brain pericyte; astrocyte of the cerebral cortex; endothelial cell; Bergmann glial cell; neuron; oligodendrocyte precursor cell |
| Tabula Muris - [Diaphragm_Smart-seq2] | endothelial cell; skeletal muscle satellite stem cell; mesenchymal stem cell; macrophage; lymphocyte |
| Tabula Muris - [Fat_Smart-seq2] | myeloid cell; endothelial cell; T cell; natural killer cell; B cell; mesenchymal stem cell of adipose |
| Tabula Muris - [Heart_Smart-seq2] | myofibroblast cell; leukocyte; endocardial cell; fibroblast; endothelial cell; cardiac muscle cell; smooth muscle cell; cardiac neuron |
| Tabula Muris - [Heart_and_Aorta_10x] | endocardial cell; erythrocyte; fibroblast; endothelial cell; cardiac muscle cell |
| Tabula Muris - [Kidney_10x] | mesangial cell; kidney cell; kidney loop of Henle ascending limb epithelial cell; kidney capillary endothelial cell; kidney collecting duct epithelial cell; natural killer cell; kidney proximal straight tubule epithelial cell; macrophage |
| Tabula Muris - [Kidney_Smart-seq2] | endothelial cell; kidney collecting duct epithelial cell; natural killer cell; epithelial cell of proximal tubule; macrophage |
| Tabula Muris - [Large_Intestine_Smart-seq2] | enterocyte of epithelium of large intestine; epithelial cell of large intestine; Brush cell of epithelium proper of large intestine; large intestine goblet cell; enteroendocrine cell |
| Tabula Muris - [Limb_Muscle_10x] | endothelial cell; T cell; skeletal muscle satellite cell; B cell; mesenchymal stem cell; macrophage |
| Tabula Muris - [Limb_Muscle_Smart-seq2] | endothelial cell; skeletal muscle satellite cell; T cell; B cell; mesenchymal stem cell; macrophage |
| Tabula Muris - [Liver_10x] | hepatocyte; endothelial cell of hepatic sinusoid; leukocyte; duct epithelial cell |
| Tabula Muris - [Lung_10x] | leukocyte; myeloid cell; lung endothelial cell; type II pneumocyte; stromal cell; non-classical monocyte; T cell; classical monocyte; natural killer cell; ciliated columnar cell of tracheobronchial tree; B cell; mast cell; alveolar macrophage |
| Tabula Muris - [Lung_Smart-seq2] | leukocyte; lung endothelial cell; myeloid cell; stromal cell; T cell; monocyte; classical monocyte; ciliated columnar cell of tracheobronchial tree; natural killer cell; B cell; epithelial cell of lung |
| Tabula Muris - [Mammary_Gland_10x] | luminal epithelial cell of mammary gland; endothelial cell; stromal cell; T cell; B cell; macrophage; basal cell |
| Tabula Muris - [Mammary_Gland_Smart-seq2] | luminal epithelial cell of mammary gland; stromal cell; endothelial cell; basal cell |
| Tabula Muris - [Pancreas_Smart-seq2] | leukocyte; pancreatic D cell; pancreatic PP cell; endothelial cell; pancreatic acinar cell; pancreatic A cell; pancreatic ductal cell; type B pancreatic cell; pancreatic stellate cell |
| Tabula Muris - [Skin_Smart-seq2] | leukocyte; basal cell of epidermis; epidermal cell; stem cell of epidermis; keratinocyte stem cell |
| Tabula Muris - [Spleen_10x] | dendritic cell; T cell; natural killer cell; B cell; macrophage |
| Tabula Muris - [Spleen_Smart-seq2] | B cell; macrophage; T cell |
| Tabula Muris - [Thymus_10x] | professional antigen presenting cell; immature T cell; DN1 thymic pro-T cell |
| Tabula Muris - [Thymus_Smart-seq2] | professional antigen presenting cell; immature T cell; DN1 thymic pro-T cell |
| Tabula Muris - [Tongue_10x] | basal cell of epidermis; Langerhans cell; keratinocyte |
| Tabula Muris - [Trachea_10x] | neuroendocrine cell; endothelial cell; mesenchymal cell; epithelial cell; blood cell |
| Tabula Muris - [Trachea_Smart-seq2] | mesenchymal cell; endothelial cell; epithelial cell; blood cell |
| ALIGNED_Mus_musculus_Bladder | leukocyte; bladder cell; endothelial cell; bladder urothelial cell |
| ALIGNED_Mus_musculus_Bone_Marrow | erythroblast; late pro-B cell; naive B cell; monocyte; Fraction A pre-pro B cell; mature natural killer cell; pre-natural killer cell; immature NK T cell; granulocytopoietic cell; Slamf1-positive multipotent progenitor cell; immature B cell; granulocyte; immature T cell; immature natural killer cell; Slamf1-negative multipotent progenitor cell; macrophage; promonocyte; hematopoietic precursor cell; common lymphoid progenitor; pro-B cell; T cell; early pro-B cell; basophil; regulatory T cell; B cell; megakaryocyte-erythroid progenitor cell; granulocyte monocyte progenitor cell; proerythroblast |
| ALIGNED_Mus_musculus_Heart_and_Aorta | myofibroblast cell; leukocyte; professional antigen presenting cell; endocardial cell; erythrocyte; fibroblast; endothelial cell; cardiac muscle cell; smooth muscle cell; cardiac neuron |
| ALIGNED_Mus_musculus_Limb_Muscle | endothelial cell; T cell; skeletal muscle satellite cell; B cell; mesenchymal stem cell; macrophage |
| ALIGNED_Mus_musculus_Liver | hepatocyte; leukocyte; endothelial cell of hepatic sinusoid; Kupffer cell; cholangiocyte; natural killer cell; B cell; duct epithelial cell |
| ALIGNED_Mus_musculus_Lung | leukocyte; myeloid cell; lung endothelial cell; alveolar type 1; type II pneumocyte; stromal cell; non-classical monocyte; T cell; classical monocyte; natural killer cell; ciliated columnar cell of tracheobronchial tree; mesenchyme; alveolar type 2; B cell; monocyte; epithelial cell of lung; mast cell; alveolar macrophage |
| ALIGNED_Mus_musculus_Pancreas | gamma; delta; T_cell; type B pancreatic cell; alpha; schwann; leukocyte; pancreatic acinar cell; pancreatic ductal cell; macrophage; quiescent_stellate; activated_stellate; B_cell; beta; endothelial; pancreatic D cell; immune_other; ductal; endothelial cell; pancreatic PP cell; pancreatic A cell; pancreatic stellate cell |
| ALIGNED_Mus_musculus_Spleen | dendritic cell; T cell; natural killer cell; B cell; macrophage |
| ALIGNED_Mus_musculus_Thymus | professional antigen presenting cell; immature T cell; DN1 thymic pro-T cell |
| ALIGNED_Mus_musculus_Tongue | basal cell of epidermis; Langerhans cell; keratinocyte |
| ALIGNED_Mus_musculus_Trachea | Basal; Tuft; Ionocyte; Brush; Club; Goblet; Ionocytes; Ciliated; Secretory; Neuroendocrine; Cycling Basal (homeostasis); PNEC; Krt4/13+ |