Supported Species in Dr.Tom

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Blow listing the supported species in Dr.Tom system. You can alse check it out with more visual aera HEREopen in new window

SpeciesReference VersionlncRNAmiRNAmRNAWGBSSingle Cell RNA-seqProtein
Homo_sapiensGCF_000001405.25_GRCh37.p13SupportedSupportedSupportedSupportedUnsupportedSupported
GCF_000001405.39_GRCh38.p13SupportedSupportedSupportedSupportedUnsupportedSupported
GCF_000001405.40_GRCh38.p14SupportedSupportedSupportedSupportedUnsupportedSupported
Ensembl release-103SupportedSupportedSupportedUnsupportedSupportedSupported
Ensembl release-104SupportedSupportedSupportedUnsupportedUnsupportedSupported
Ensembl release-105SupportedSupportedSupportedUnsupportedUnsupportedSupported
10Xgenomic refdata-gex-GRCh38-2020-ASupportedSupportedSupportedUnsupportedSupportedSupported
10Xgenomic refdata-cellranger-GRCh38-3.0.0SupportedSupportedSupportedUnsupportedSupportedSupported
10Xgenomic refdata-cellranger-hg19-3.0.0SupportedSupportedSupportedUnsupportedSupportedSupported
BD GRCh39-PhiX-gencodev29SupportedSupportedSupportedUnsupportedSupportedSupported
UCSC hg38SupportedSupportedSupportedSupportedUnsupportedSupported
Mus_musculusGCF_000001635.26_GRCm38.p6SupportedSupportedSupportedSupportedUnsupportedSupported
GCF_000001635.27_GRCm39SupportedSupportedSupportedSupportedUnsupportedSupported
Ensembl release-103SupportedSupportedSupportedUnsupportedSupportedSupported
Ensembl release-104SupportedSupportedSupportedUnsupportedUnsupportedSupported
Ensembl release-105SupportedSupportedSupportedUnsupportedUnsupportedSupported
UCSC mm39SupportedSupportedSupportedSupportedUnsupportedSupported
UCSC mm10SupportedSupportedSupportedUnsupportedUnsupportedSupported
10Xgenomic refdata-gex-mm10-2020-AUnsupportedUnsupportedUnsupportedUnsupportedSupportedUnsupported
10Xgenomic refdata-cellranger-mm10-3.0.0UnsupportedUnsupportedUnsupportedUnsupportedSupportedUnsupported
Rattus_norvegicusGCF_000001895.5_Rnor_6.0SupportedSupportedSupportedSupportedUnsupportedSupported
GCF_015227675.2_mRatBN7.2SupportedSupportedSupportedSupportedUnsupportedSupported
Ensembl release-104SupportedSupportedSupportedUnsupportedUnsupportedSupported
Ensembl release-105SupportedSupportedSupportedUnsupportedUnsupportedSupported
Ensembl release-102UnsupportedUnsupportedUnsupportedUnsupportedSupportedUnsupported
Nicotiana_tabacumGCF_000715135.1_Ntab-TN90SupportedSupportedSupportedUnsupportedUnsupportedSupported
Edwards2017 (chromosome)UnsupportedUnsupportedSupportedUnsupportedUnsupportedUnsupported
Edwards2017 (scaffold)UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Arabidopsis_thalianaGCF_000001735.4_TAIR10.1SupportedSupportedSupportedSupportedUnsupportedSupported
TAIR10UnsupportedSupportedSupportedSupportedUnsupportedSupported
Araport11UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Danio_rerioGCF_000002035.6_GRCz11SupportedSupportedSupportedSupportedUnsupportedSupported
Ensembl release-104SupportedSupportedSupportedUnsupportedSupported (Cell Annotation and Cell Communication are not supported)Supported
Ensembl release-105SupportedSupportedSupportedUnsupportedUnsupportedSupported
Drosophila_melanogasterGCF_000001215.4_Release_6_plus_ISO1_MTSupportedSupportedSupportedUnsupportedUnsupportedSupported
Oryza_sativa_Japonica_GroupGCF_001433935.1_IRGSP-1.0SupportedSupportedSupportedSupportedUnsupportedSupported
rapdb-Os-Nipponbare-Reference-IRGSP-1.0UnsupportedSupportedSupportedSupportedUnsupportedSupported
rice.uga.edu_version_7.0UnsupportedSupportedSupportedSupportedUnsupportedSupported
RiceRC_ IGDBv1.9311UnsupportedUnsupportedSupportedSupportedUnsupportedSupported
Brassica_napusGCF_000686985.2_Bra_napus_v2.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
BnPIR_zs11.v0UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
BnPIR_Darmor.v4.1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Bos_taurusGCF_000003205.7_Btau_5.0.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_002263795.1_ARS-UCD1.2SupportedSupportedSupportedUnsupportedUnsupportedSupported
Sus_scrofaGCF_000003025.6_Sscrofa11.1SupportedSupportedSupportedUnsupportedSupported (Cell Annotation and Cell Communication are not supported)Supported
Zea_maysGCF_000005005.2_B73_RefGen_v4SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Zm-B73-REFERENCE-GRAMENE-4.0UnsupportedUnsupportedSupportedUnsupportedSupported (Cell Annotation and Cell Communication are not supported)Supported
Caenorhabditis_elegansGCF_000002985.6_WBcel235SupportedSupportedSupportedUnsupportedUnsupportedSupported
Tetrahymena_thermophila_SB210_312017GCF_000189635.1_JCVI-TTA1-2.2UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Solanum_lycopersicum_4081GCF_000188115.4_SL3.0SupportedSupportedSupportedSupportedUnsupportedSupported
JGI-ITAG2.4UnsupportedSupportedSupportedSupportedUnsupportedSupported
solgenomics.net-ITAG4.0SupportedSupportedSupportedSupportedUnsupportedSupported
GCF_000188115.5_SL3.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Gallus_gallus_9031GCF_000002315.5_GRCg6aSupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_016699485.2_bGalGal1.mat.broiler.GRCg7bSupportedSupportedSupportedUnsupportedUnsupportedSupported
release-107UnsupportedUnsupportedSupportedUnsupportedSupported (Cell Annotation and Cell Communication are not supported)Supported
Populus_trichocarpa_3694GCF_000002775.4_Pop_tri_v3SupportedSupportedSupportedUnsupportedUnsupportedSupported
JGI_v4.1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Gossypium_hirsutum_3635GCF_000987745.1_ASM98774v1SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_007990345.1_Gossypium_hirsutum_v2.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
cottongen_CRI_v1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Saccharomyces_cerevisiae_S288C_559292GCF_000146045.2_R64SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Glycine_max_3847GCF_000004515.5_Glycine_max_v2.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
JGI-Wm82.a4.v1UnsupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_000004515.6_Glycine_max_v4.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_004193775.1_ASM419377v2SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Aedes_aegypti_7159GCF_002204515.2_AaegL5.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Malus_domestica_3750GCF_002114115.1_ASM211411v1SupportedSupportedSupportedUnsupportedUnsupportedSupported
Citrus_sinensis_2711GCF_000317415.1_Csi_valencia_1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Metarhizium_acridum_CQMa_102_655827GCF_000187405.1_MetAcr_May2010UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Prunus_persica_3760GCF_000346465.2_Prunus_persica_NCBIv2SupportedSupportedSupportedUnsupportedUnsupportedSupported
Aedes_albopictus_7160GCF_001876365.2_canu_80X_arrow2.2SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
GCF_006496715.1_Aalbo_primary.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Medicago_truncatula_3880GCF_000219495.3_MedtrA17_4.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_003473485.1_MtrunA17r5.0-ANRSupportedSupportedSupportedUnsupportedUnsupportedSupported
Escherichia_coli_str._K-12_substr._MG1655_511145GCF_000005845.2_ASM584v2SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Aspergillus_niger_5061GCF_000002855.3_ASM285v2UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Ovis_aries_9940GCF_002742125.1_Oar_rambouillet_v1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_000298735.2_Oar_v4.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_016772045.1_ARS-UI_Ramb_v2.0SupportedSupportedSupportedUnsupportedSupported (Cell Annotation and Cell Communication are not supported)Supported
Capra_hircus_9925GCF_001704415.1_ARS1SupportedSupportedSupportedUnsupportedUnsupportedSupported
Macaca_fascicularis_9541GCF_000364345.1_Macaca_fascicularis_5.0SupportedUnsupportedSupportedSupportedUnsupportedSupported
Apis_mellifera_7460GCF_003254395.2_Amel_HAv3.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
Apis_ceranaGCF_001442555.1_ACSNU-2.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Odocoileus_virginianus_texanus_9880GCF_002102435.1_Ovir.te_1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Arachis_hypogaea_3818GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3SupportedSupportedSupportedSupportedUnsupportedSupported
Oryctolagus_cuniculus_9986GCF_000003625.3_OryCun2.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Ziziphus_jujuba_326968GCF_000826755.1_ZizJuj_1.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Bactrocera_dorsalis_27457GCF_000789215.1_ASM78921v2SupportedSupportedSupportedUnsupportedUnsupportedSupported
Manihot_esculenta_3983GCF_001659605.1_Manihot_esculenta_v6SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_001659605.2_M.esculenta_v8SupportedSupportedSupportedUnsupportedUnsupportedSupported
Arachis_duranensis_130453GCF_000817695.2_Aradu1.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Ananas_comosus_4615GCF_001540865.1_ASM154086v1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Helicoverpa_armigera_29058GCF_002156985.1_Harm_1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Gossypium_raimondii_29730GCF_000327365.1_Graimondii2_0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Aphis_gossypii_80765GCF_004010815.1_ASM401081v1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Plutella_xylostella_51655GCF_000330985.1_DBM_FJ_V1.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_905116875.1_Haplomerged_assemblySupportedSupportedSupportedUnsupportedUnsupportedSupported
Fusarium_graminearum_PH-1_229533GCF_000240135.3_ASM24013v3UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Chlorocebus_sabaeus_60711GCF_000409795.2_Chlorocebus_sabeus_1.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
GCF_015252025.1_Vero_WHO_p1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Vitis_vinifera_29760GCF_000003745.3_12XSupportedSupportedSupportedSupportedUnsupportedSupported
ensembl_release-55UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Bombyx_mori_7091GCF_000151625.1_ASM15162v1SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_014905235.1_Bmori_2016v1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Solanum_tuberosum_4113GCF_000226075.1_SolTub_3.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
spuddb_DMv6.1UnsupportedSupportedSupportedUnsupportedUnsupportedSupported
JGI_v6.1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Triticum aestivum L.(Chinese Spring)IWGSC RefSeq assembly v1.0UnsupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_018294505.1_IWGSC_CS_RefSeq_v2.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
LncPheDB_v2023-11-24SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
barley (Hordeum vulgare)Barley_Morex_V2UnsupportedSupportedSupportedUnsupportedUnsupportedSupported
Large yellow croaker (Larimichthys crocea)GCA_003845795.1 LCFGL_HiC_1.0UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
GCF_000972845.2_L_crocea_2.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Brassica_rapaGCF_000309985.1_Brapa_1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_000309985.2_CAAS_Brap_v3.01SupportedSupportedSupportedUnsupportedUnsupportedSupported
C_albicans_SC5314candidagenome_Assembly22SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Anas_platyrhynchosGCF_000355885.1_BGI_duck_1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_015476345.1_ZJU1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Komagataella_phaffii_GS115GCF_000027005.1_ASM2700v1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Pantholops_hodgsoniiGCF_000400835.1_PHO1.0UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Tribolium_castaneumGCF_000002335.3_Tcas5.2SupportedSupportedSupportedUnsupportedUnsupportedSupported
Xenopus_laevisGCF_017654675.1_Xenopus_laevis_v10.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
Canis_familiarisGCF_000002285.3_CanFam3.1SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_000002285.5_Dog10K_Boxer_TashaSupportedSupportedSupportedUnsupportedUnsupportedSupported
Daucus_carota_subsp_sativusGCF_001625215.1_ASM162521v1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Cucumis_sativusGCF_000004075.2_ASM407v2SupportedSupportedSupportedUnsupportedUnsupportedSupported
GCF_000004075.3_Cucumber_9930_V3SupportedSupportedSupportedUnsupportedUnsupportedSupported
Capsicum_annuumGCF_000710875.1_Pepper_Zunla_1_Ref_v1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Trichoderma_reesei_QM6aGCF_000167675.1_v2.0UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Fragaria_vesca_subsp_vescaGCF_000184155.1_FraVesHawaii_1.0SupportedSupportedSupportedUnsupportedUnsupportedSupported
Pyrus_bretschneideriGCF_000315295.1_Pbr_v1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Sesamum_indicumGCF_000512975.1_S_indicum_v1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Chlorella_variabilis_NC64AGCF_000147415.1_v_1.0UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Camelus_bactrianusGCF_000767855.1_Ca_bactrianus_MBC_1.0SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Mesocricetus_auratusGCF_017639785.1_BCM_Maur_2.0SupportedUnsupportedSupportedUnsupportedSupported (Cell Annotation and Cell Communication are not supported)Supported
Populus_deltoidesJGI_WV94.v2.1UnsupportedUnsupportedSupportedSupportedUnsupportedSupported
Populus_alba_x_Populus_glandulosaCNCB_v2019-10-12UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Camellia_sinensisCSS_ChrLev_20200506UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Coptis_chinensisGCA_015680905.1_ASM1568090v1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Alternaria_alternataJGI_v2019-11-14UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Carassius_auratusCNCB_v2022-05-26UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Carassius_gibelioCNCB_v2022-05-26UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Chrysanthemum_x_morifoliumfigshare_v2023-03-14UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Citrus_clementinaJGI_Citrus_clementina_v1.0UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Coccinella_septempunctataInsectBase_GCA_907165205.1UnsupportedSupportedSupportedUnsupportedUnsupportedSupported
Lactuca_sativaGCF_002870075.4_Lsat_Salinas_v11SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Lobularia_maritimaCNCB_v2020-12-21UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Miscanthus_sinensisJGI_v7.1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Medicago_sativafigshare_v2020-07-09UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Mustela_putorius_furoGCF_011764305.1_ASM1176430v1.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Oncorhynchus_kisutchGCF_002021735.2_Okis_V2SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Toxoplasma_gondii_GT1GCA_000149715.2_TGGT1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
toxodb_v2023-04-18UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Aspergillus_flavusEnsembl-release-57UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Aspergillus_nidulansjgi-v2011-02-04UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Camponotus_floridanusGCF_003227725.1_Cflo_v7.5SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Cocos_nuciferaGCA_008124465.1_ASM812446v1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Fagus_sylvaticaThinesLab_version_2UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Frankliniella_occidentalisGCF_000697945.3_Focc_3.1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Neophocaena_asiaeorientalis_asiaeorientalisGCF_003031525.2_Neophocaena_asiaeorientalis_V1.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Olea_europaea_var_sylvestrisolivegenome_v2023-11-01UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Paeonia_ostiiCNCB_v2022-05-31UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Rhododendron_simsiiGCA_014282245.1_ASM1428224v1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Sinocyclocheilus_grahamiGCF_001515645.1_SAMN03320097.WGS_v1.1SupportedUnsupportedSupportedUnsupportedUnsupportedSupported
Solanum_melongenasolgenomics_V4.1UnsupportedUnsupportedSupportedUnsupportedUnsupportedSupported